INES-Ruhengeri as applied sciences institution has different laboratories which help in teaching/learning, research and community service activities.
- Material testing laboratory
- Hydraulic laboratory
- Water quality laboratory
- Food processing unit
- Food Microbiology laboratory
- Clinical Microbiology laboratory
- Parasitology laboratory
- Molecular biology
- Phlebotomy and Anatomy laboratory
- Histopathology laboratory
- Chemistry laboratory
- Haematology and Immunohematology laboratory
- Clinical Chemistry laboratory
- Tissu culture laboratory
- Surveying laboratory
- Computer laboratory